Cytological Distinctions Between Timun Suri and Cucumber Discovered by Fluorescence In Situ Hybridization (FISH) Using 45S Ribosomal DNA Gene
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Acosta, M. C., Moscone, E. A., & Cocucci, A. A. (2016). Using chromosomal data in the phylogenetic and molecular dating framework: Karyotype evolution and diversification in Nierembergia (Solanaceae) influenced by historical changes in sea level. Plant Biology, 18(3), 514–526. crossref
Amosova, A. V., Bolsheva, N. L., Zoshchuk, S. A., Twardovska, M. O., Yurkevich, O. Y., Andreev, I. O., … Muravenko, O. V. (2017). Comparative molecular cytogenetic characterization of seven Deschampsia (Poaceae) species. PLoS ONE, 12(4), e0175760. crossref
Cabrero, J., & Camacho, J. P. M. (2008). Location and expression of ribosomal RNA genes in grasshoppers: Abundance of silent and cryptic loci. Chromosome Research, 16, 595–607. crossref
Chen, J.-F., Luo, X.-D., Qian, C.-T., Jahn, M. M., Staub, J. E., Zhuang, F.-Y., … Ren, G. (2004). Cucumis monosomic alien addition lines: Morphological, cytological, and genotypic analyses. Theoretical and Applied Genetics, 108, 1343–1348. crossref
Chen, J.-F., Staub, J. E., Adelberg, J. W., & Jiang, J. (1999). Physical mapping of 45S rRNA genes in Cucumis species by fluorescence in situ hybridization. Canadian Journal of Botany, 77(3), 389–393. crossref
Chen, J.-F., Staub, J. E., Qian, C., Jiang, J., Luo, X., & Zhuang, F. (2003). Reproduction and cytogenetic characterization of interspecific hybrids derived from Cucumis hystrix Chakr. x Cucumis sativus L. Theoretical and Applied Genetics, 106, 688–695. crossref
Chen, J.-F., Staub, J. E., Tashiro, Y., Isshiki, S., & Miyazaki, S. (1997). Successful interspecific hybridization between Cucumis sativus L. and C. hystrix Chakr. Euphytica, 96, 413–419. crossref
Chen, J.-F., Staub, J., Adelberg, J., Lewis, S., & Kunkle, B. (2002). Synthesis and preliminary characterization of a new species (amphidiploid) in Cucumis. Euphytica, 123, 315–322. crossref
De Melo, N. F., & Guerra, M. (2003). Variability of the 5S and 45S rDNA sites in Passiflora L. species with distinct base chromosome numbers. Annals of Botany, 92(2), 309–316. crossref
Dhillon, N. P. S., Ranjana, R., Singh, K., Eduardo, I., Monforte, A. J., Pitrat, M., … Singh, P. P. (2007). Diversity among landraces of Indian snapmelon (Cucumis melo var. momordica). Genetic Resources and Crop Evolution, 54, 1267–1283. crossref
Dubcovsky, J., & Dvorák, J. (1995). Ribosomal RNA multigene loci: Nomads of the Triticeae genomes. Genetics, 140(4), 1367–1377. Retrieved from website
Ganal, M., & Hemleben, V. (1986). Comparison of the ribosomal RNA genes in four closely related Cucurbitaceae. Plant Systematics and Evolution, 154(1), 63–77. crossref
Gerlach, W. L., & Bedbrook, J. R. (1979). Cloning and characterization of ribosomal RNA genes from wheat and barley. Nucleic Acids Research, 7(7), 1869–1885. crossref
Gong, Z., Xue, C., Zhang, M., Guo, R., Zhou, Y., & Shi, G. (2013). Physical localization and DNA methylation of 45S rRNA gene loci in Jatropha curcas L. PLoS ONE, 8(12), e84284. crossref
Han, Y.-H., Zhang, Z.-H., Liu, J.-H., Lu, J.-Y., Huang, S.-W., & Jin, W.-W. (2008). Distribution of the tandem repeat sequences and karyotyping in cucumber (Cucumis sativus L.) by fluorescence in situ hybridization. Cytogenetic and Genome Research, 122, 80–88. crossref
Hanson, R. E., Islam-Faridi, M. N., Percival, E. A., Crane, C. F., Ji, Y., McKnight, T. D., … Price, H. J. (1996). Distribution of 5S and 18S-28S rDNA loci in a tetraploid cotton (Gossypium hirsutum L.) and its putative diploid ancestors. Chromosoma, 105, 55–61. crossref
Hayashi, M., Miyahara, A., Sato, S., Kato, T., Yoshikawa, M., Taketa, M., … Harada, K. (2001). Construction of a genetic linkage map of the model legume Lotus japonicus using an intraspecific F2 population. DNA Research, 8(6), 301–310. crossref
Huda, I. N., & Daryono, B. S. (2013). Analisis variasi genetik melon (Cucumis melo L.) kultivar gama melon basket dengan metode random amplified polymorphic DNA. Biogenesis: Jurnal Ilmiah Biologi, 1(1), 41–50. crossref
Jiang, J., & Gill, B. S. (2006). Current status and the future of fluorescence in situ hybridization (FISH) in plant genome research. Genome, 49(9), 1057–1068. crossref
Kato, A., Lamb, J. C., & Birchler, J. A. (2004). Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize. Proceedings of the National Academy of Sciences of the United States of America, 101(37), 13554–13559. crossref
Koo, D.-H., Nam, Y.-W., Choi, D., Bang, J.-W., de Jong, H., & Hur, Y. (2010). Molecular cytogenetic mapping of Cucumis sativus and C. melo using highly repetitive DNA sequences. Chromosome Research, 8, 325–336. crossref
Li, K., Wang, H., Wang, J., Sun, J., Li, Z., & Han, Y. (2016). Divergence between C. melo and African Cucumis species identified by chromosome painting and rDNA distribution pattern. Cytogenetic and Genome Research, 150(2), 150–155. crossref
Li, Z.-Y., Fu, M.-L., Hu, F.-F., Huang, S.-F., & Song, Y.- C. (2006). Visualization of the ribosomal DNA (45S rDNA) of Indica rice with FISH on some phases of cell cycle and extended DNA fibers. Biocell, 30(1), 27–32. crossref
Liu, C., Liu, J., Li, H., Zhang, Z., Han, Y., Huang, S., & Jin, W. (2010). Karyotyping in melon (Cucumis melo L.) by cross-species fosmid fluorescence in situ hybridization. Cytogenetic and Genome Research, 129(1–3), 241–249. crossref
Lou, Q., Zhang, Y., He, Y., Li, J., Jia, L., Cheng, C., … Chen, J. (2014). Single-copy gene-based chromosome painting in cucumber and its application for chromosome rearrangement analysis in Cucumis. Plant Journal, 78(1), 169–179. crossref
Manohar, S. H., & Murthy, H. N. (2012). Estimation of phenotypic divergence in a collection of Cucumis melo, including shelf-life of fruit. Scientia Horticulturae, 148, 74–82. crossref
Marcon, A. B., Leão Barros, I. C., & Guerra, M. (2005). Variation in chromosome numbers, CMA bands and 45S rDNA sites in species of Selaginella (Pteridophyta). Annals of Botany, 95(2), 271–276. crossref
Navrátilová, A., Neumann, P., & Macas, J. (2003). Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences. Annals of Botany, 91(7), 921–926. crossref
Neves, N., Delgado, M., Silva, M., Caperta, A., MoraisCecílio, L., & Viegas, W. (2005). Ribosomal DNA heterochromatin in plants. Cytogenetic and Genome Research, 109(1–3), 104–111. crossref
Pedrosa-Harand, A., de Almeida, C. C. S., Mosiolek, M., Blair, M. W., Schweizer, D., & Guerra, M. (2006). Extensive ribosomal DNA amplification during Andean common bean (Phaseolus vulgaris L.) evolution. Theoretical and Applied Genetics, 112, 924–933. crossref
Penner, G. A., Bush, A., Wise, R., Kim, W., Domier, L., Kasha, K., … Fedak, G. (1993). Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. Genome Research, 2, 341–345. crossref
Pitrat, M., Chauvet, M., & Foury, C. (1999). Diversity, history and production of cultivated cucurbits. Acta Horticulturae, 492, 21–28. crossref
Rahayu, S. E., & Hartana, A. (2002). Biosistematika Cucumis (Cucurbitaceae) di Jawa. Floribunda, 2(2), 38–43. Retrieved from website
Raskina, O., Belyayev, A., & Nevo, E. (2004a). Activity of the En/Spm-like transposons in meiosis as a base for chromosome repatterning in a small, isolated, peripheral population of Aegilops speltoides Tausch. Chromosome Research, 12(2), 153–161. crossref
Raskina, O., Belyayev, A., & Nevo, E. (2004b). Quantum speciation in Aegilops: Molecular cytogenetic evidence from rDNA cluster variability in natural populations. Proceedings of the National Academy of Sciences of the United States of America, 101(41), 14818–14823. crossref
Roa, F., & Guerra, M. (2012). Distribution of 45S rDNA sites in chromosomes of plants: Structural and evolutionary implications. BMC Evolutionary Biology, 12, 225. crossref
Schwarzacher, T., & Heslop-Harrison, P. (2000). Practical in situ hybridization. Oxford: BIOS Scientific Publishers. Retrieved from website
Sebastian, P., Schaefer, H., Telford, I. R. H., & Renner, S. S. (2010). Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia. Proceedings of the National Academy of Sciences of the United States of America, 107(32), 14269–14273. crossref
Setiawan, A. B. (2018). Molecular cytogenetic studies on satellite DNA and retrotransposon in Cucumis species (Thesis). Chiba University.
Setiawan, A. B., Teo, C. H., Kikuchi, S., Sassa, H., & Koba, T. (2018). An improved method for inducing prometaphase chromosomes in plants. Molecular Cytogenetics, 11, 32. crossref
She, C.-W., Jiang, X.-H., Ou, L.-J., Liu, J., Long, K.-L., Zhang, L.-H., … Hu, J.-C. (2015). Molecular cytogenetic characterisation and phylogenetic analysis of the seven cultivated Vigna species (Fabaceae). Plant Biology, 17(1), 268–280. crossref
Singh, A. K., Kumar, S., Singh, H., Rai, V. P., Singh, B. D., & Pandey, S. (2015). Genetic diversity in Indian snapmelon (Cucumis melo var. momordica) accessions revealed by ISSR markers. Plant OMICS, 8(1), 9–16. Retrieved from pdf
Skroch, P., & Nienhuis, J. (1995). Impact of scoring error and reproducibility RAPD data on RAPD based estimates of genetic distance. Theoretical and Applied Genetics, 91, 1086–1091. crossref
Vaio, M., Speranza, P., Valls, J. F., Guerra, M., & Mazzella, C. (2005). Localization of the 5S and 45S rDNA sites and cpDNA sequence analysis in species of the quadrifaria group of Paspalum (Poaceae, Paniceae). Annals of Botany, 96(2), 191–200. crossref
Wendel, J. F., Schnabel, A., & Seelanan, T. (1995). Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proceedings of the National Academy of Sciences of the United States of America, 92(1), 280–284. crossref
Zhang, Y., Cheng, C., Li, J., Yang, S., Wang, Y., Li, Z., … Lou, Q. (2015). Chromosomal structures and repetitive sequences divergence in Cucumis species revealed by comparative cytogenetic mapping. BMC Genomics, 16, 730. crossref
Zhang, Z.-T., Yang, S.-Q., Li, Z.-A., Zhang, Y.-X., Wang, Y.-Z., Cheng, C. Y., … Lou, Q. F. (2016). Comparative chromosomal localization of 45S and 5S rDNAs and implications for genome evolution in Cucumis. Genome, 59(7), 449–457. crossref
Zhao, X., Lu, J., Zhang, Z., Hu, J., Huang, S., & Jin, W. (2011). Comparison of the distribution of the repetitive DNA sequences in three variants of Cucumis sativus reveals their phylogenetic relationships. Journal of Genetics and Genomics, 38(1), 39–45. crossref
DOI: http://doi.org/10.17503/agrivita.v42i3.2142
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